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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.10.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2021-06-24, 12:19 based on data in: /mnt/beegfs/tt164677e/phyllotis_prelim/logs/fastp

        General Statistics

        Showing 71/71 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        GD_2024_CKDL210010273-1a-AK2705-AK14608_HC3LJDSX2_L1_1
        14.2%
        40.3%
        23.0%
        12.3%
        GD_2025_CKDL210010273-1a-AK2691-AK14609_HC3LJDSX2_L1_1
        15.9%
        40.2%
        23.2%
        12.9%
        GD_2026_CKDL210010273-1a-AK2723-AK7355_HC3LJDSX2_L1_1
        15.1%
        40.2%
        23.2%
        10.0%
        GD_2029_CKDL210010273-1a-AK15560-AK5792_HC3LJDSX2_L1_1
        15.8%
        40.9%
        22.3%
        8.8%
        GD_2039_CKDL210010273-1a-AK2687-AK2270_HC3LJDSX2_L1_1
        16.0%
        40.7%
        18.7%
        5.0%
        GD_2041_CKDL210010273-1a-AK15561-AK2355_HC3LJDSX2_L1_1
        15.3%
        40.5%
        23.4%
        10.6%
        GD_2042_CKDL210010273-1a-AK3943-AK15562_HC3LJDSX2_L1_1
        16.6%
        38.8%
        20.9%
        16.5%
        GD_2043_CKDL210010273-1a-AK2725-AK15563_HC3LJDSX2_L1_1
        15.3%
        41.1%
        21.0%
        7.8%
        GD_2050_CKDL210010273-1a-AK15564-AK15565_HC3LJDSX2_L1_1
        14.4%
        43.0%
        21.5%
        6.8%
        GD_2052_CKDL210010273-1a-AK15566-AK15567_HC3LJDSX2_L1_1
        15.3%
        42.4%
        21.6%
        7.7%
        GD_2053_CKDL210010273-1a-AK8224-AK15568_HC3LJDSX2_L1_1
        16.1%
        40.3%
        20.2%
        5.4%
        GD_2054_CKDL210010273-1a-AK15569-AK13178_HC3LJDSX2_L1_1
        15.1%
        40.7%
        21.6%
        7.7%
        GD_2055_CKDL210010273-1a-AK11317-AK15570_HC3LJDSX2_L1_1
        15.0%
        40.9%
        21.7%
        6.9%
        GD_2056_CKDL210010273-1a-AK2724-AK15571_HC3LJDSX2_L1_1
        15.6%
        40.6%
        22.2%
        7.3%
        GD_2057_CKDL210010273-1a-AK15572-AK319_HC3LJDSX2_L1_1
        14.2%
        40.8%
        21.3%
        9.3%
        GD_2058_CKDL210010273-1a-AK350-AK15582_HC3LJDSX2_L1_1
        15.6%
        40.9%
        20.2%
        7.3%
        GD_2059_CKDL210010273-1a-AK2712-AK15583_HC3LJDSX2_L1_1
        14.6%
        41.3%
        19.2%
        5.8%
        GD_2060_CKDL210010273-1a-AK2699-AK5437_HC3LJDSX2_L1_1
        17.2%
        42.3%
        19.6%
        6.2%
        GD_2068_CKDL210010273-1a-AK2719-AK14702_HC3LJDSX2_L1_1
        15.9%
        41.4%
        20.6%
        7.2%
        GD_2069_CKDL210010273-1a-AK4950-AK15584_HC3LJDSX2_L1_1
        14.7%
        40.3%
        22.0%
        9.6%
        GD_2070_CKDL210010273-1a-AK2727-AK15585_HC3LJDSX2_L1_1
        14.9%
        40.4%
        20.6%
        6.7%
        GD_2071_CKDL210010273-1a-AK2716-AK15586_HC3LJDSX2_L1_1
        16.3%
        40.8%
        22.5%
        9.6%
        GD_2072_CKDL210010273-1a-AK2729-AK15587_HC3LJDSX2_L1_1
        16.1%
        40.4%
        22.5%
        10.2%
        GD_2077_CKDL210010273-1a-AK2690-AK15588_HC3LJDSX2_L1_1
        15.2%
        40.6%
        20.9%
        10.2%
        GD_2078_CKDL210010273-1a-AK1321-AK5059_HC3LJDSX2_L1_1
        14.8%
        40.5%
        19.4%
        5.4%
        GD_2079_CKDL210010273-1a-AK4948-AK15589_HC3LJDSX2_L1_1
        16.3%
        40.9%
        18.9%
        4.4%
        GD_2082_CKDL210010273-1a-AK351-AK10790_HC3LJDSX2_L1_1
        15.2%
        40.6%
        21.0%
        6.4%
        GD_2084_CKDL210010273-1a-AK2703-AK15591_HC3LJDSX2_L1_1
        18.2%
        40.5%
        19.2%
        5.4%
        GD_2085_CKDL210010273-1a-AK2721-AK15592_HC3LJDSX2_L1_1
        15.5%
        40.2%
        18.0%
        4.3%
        GD_2086_CKDL210010273-1a-AK2692-AK3195_HC3LJDSX2_L1_1
        16.9%
        40.7%
        19.7%
        5.6%
        GD_2087_CKDL210010273-1a-AK4949-AK15593_HC3LJDSX2_L1_1
        16.0%
        40.5%
        20.3%
        7.0%
        GD_2088_CKDL210010273-1a-AK7504-AK15594_HC3LJDSX2_L1_1
        15.2%
        40.2%
        20.5%
        6.2%
        GD_2091_CKDL210010273-1a-AK8222-AK7327_HC3LJDSX2_L1_1
        15.7%
        40.2%
        19.9%
        5.1%
        GD_2093_CKDL210010273-1a-AK2695-AK15595_HC3LJDSX2_L1_1
        14.3%
        41.0%
        20.1%
        4.9%
        GD_2094_CKDL210010273-1a-AK2697-AK14835_HC3LJDSX2_L1_1
        15.3%
        40.1%
        20.1%
        5.8%
        GD_2095_CKDL210010273-1a-AK2704-AK1881_HC3LJDSX2_L1_1
        16.3%
        40.2%
        18.7%
        3.7%
        GD_2096_CKDL210010273-1a-AK14834-AK10837_HC3LJDSX2_L1_1
        14.8%
        40.4%
        21.7%
        7.5%
        GD_2097_CKDL210010273-1a-AK2706-AK14833_HC3LJDSX2_L1_1
        15.1%
        40.3%
        20.3%
        5.6%
        GD_2099_CKDL210010273-1a-AK2701-AK4510_HC3LJDSX2_L1_1
        14.9%
        40.3%
        18.7%
        5.0%
        GD_2100_CKDL210010273-1a-AK8223-AK15937_HC3LJDSX2_L1_1
        15.7%
        40.2%
        20.3%
        8.1%
        GD_2101_CKDL210010273-1a-AK15931-AK15932_HC3LJDSX2_L1_1
        15.1%
        40.2%
        20.2%
        5.9%
        GD_2103_CKDL210010273-1a-AK15933-AK15934_HC3LJDSX2_L1_1
        15.7%
        40.1%
        17.0%
        3.8%
        GD_2104_CKDL210010273-1a-AK2689-AK15935_HC3LJDSX2_L1_1
        15.6%
        40.2%
        19.4%
        5.2%
        GD_2105_CKDL210010273-1a-AK2710-AK15936_HC3LJDSX2_L1_1
        15.4%
        40.1%
        19.7%
        5.2%
        GD_2106_CKDL210010273-1a-AK2711-AK15535_HC3LJDSX2_L1_1
        15.2%
        40.2%
        19.9%
        5.3%
        GD_2107_CKDL210010273-1a-AK2722-AK634_HC3LJDSX2_L1_1
        15.3%
        40.5%
        20.3%
        5.2%
        GD_2117_CKDL210010273-1a-AK1541-AK15926_HC3LJDSX2_L1_1
        14.1%
        40.1%
        21.1%
        11.3%
        GD_2118_CKDL210010273-1a-AK354-AK15545_HC3LJDSX2_L1_1
        15.0%
        40.7%
        21.6%
        8.8%
        GD_2119_CKDL210010273-1a-AK2696-AK15927_HC3LJDSX2_L1_1
        15.1%
        40.8%
        21.2%
        6.9%
        GD_2120_CKDL210010273-1a-AK15928-AK15929_HC3LJDSX2_L1_1
        14.2%
        40.2%
        23.2%
        12.9%
        GD_2121_CKDL210010273-1a-AK2708-AK8606_HC3LJDSX2_L1_1
        14.8%
        40.3%
        25.9%
        15.4%
        GD_2133_CKDL210010273-1a-AK353-AK15930_HC3LJDSX2_L1_1
        14.8%
        40.2%
        24.2%
        12.4%
        GD_2134_CKDL210010273-1a-AK5752-AK15536_HC3LJDSX2_L1_1
        15.3%
        40.2%
        22.8%
        12.1%
        GD_2150_CKDL210010273-1a-AK7769-AK3681_HC3LJDSX2_L1_1
        15.4%
        40.2%
        21.6%
        10.7%
        GD_2155_CKDL210010273-1a-AK2688-AK15719_HC3LJDSX2_L1_1
        15.0%
        40.0%
        21.0%
        7.2%
        MQC_343_CKDL210010273-1a-AK2720-AK6853_HC3LJDSX2_L1_1
        15.1%
        40.1%
        20.5%
        6.8%
        MQC_345_CKDL210010273-1a-AK2728-AK15721_HC3LJDSX2_L1_1
        15.5%
        40.3%
        22.1%
        6.8%
        MQC_346_CKDL210010273-1a-AK15537-AK15538_HC3LJDSX2_L1_1
        14.4%
        40.1%
        21.1%
        6.7%
        MQC_347_CKDL210010273-1a-AK15722-AK12373_HC3LJDSX2_L1_1
        15.9%
        40.4%
        22.4%
        8.7%
        MQC_350_CKDL210010273-1a-AK2693-AK15723_HC3LJDSX2_L1_1
        14.5%
        40.7%
        20.2%
        6.1%
        MQC_352_CKDL210010273-1a-AK316-AK15724_HC3LJDSX2_L1_1
        15.6%
        40.2%
        20.0%
        4.8%
        MQC_353_CKDL210010273-1a-AK15725-AK15726_HC3LJDSX2_L1_1
        14.3%
        40.2%
        20.5%
        5.9%
        MQC_354_CKDL210010273-1a-AK2726-AK11337_HC3LJDSX2_L1_1
        15.6%
        40.2%
        19.9%
        5.6%
        MQC_355_CKDL210010273-1a-AK2700-AK15727_HC3LJDSX2_L1_1
        14.8%
        40.2%
        20.8%
        6.6%
        MQC_357_CKDL210010273-1a-AK15728-AK15729_HC3LJDSX2_L1_1
        16.0%
        40.5%
        21.2%
        6.7%
        MQC_358_CKDL210010273-1a-AK2714-AK15539_HC3LJDSX2_L1_1
        14.8%
        40.2%
        20.1%
        7.9%
        MQC_359_CKDL210010273-1a-AK8338-AK5802_HC3LJDSX2_L1_1
        16.2%
        40.1%
        20.8%
        9.1%
        MQC_360_CKDL210010273-1a-AK15730-AK15731_HC3LJDSX2_L1_1
        15.5%
        40.1%
        17.0%
        5.2%
        MQC_361_CKDL210010273-1a-AK315-AK15732_HC3LJDSX2_L1_1
        14.8%
        40.8%
        20.3%
        8.9%
        MQC_362_CKDL210010273-1a-AK2702-AK15738_HC3LJDSX2_L1_1
        15.7%
        40.2%
        18.6%
        7.5%
        MQC_364_CKDL210010273-1a-AK314-AK15739_HC3LJDSX2_L1_1
        14.9%
        40.2%
        23.6%
        12.7%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...)

        Filtered Reads

        Filtering statistics of sampled reads.

        loading..

        Duplication Rates

        Duplication rates of sampled reads.

        loading..

        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

        loading..

        GC Content

        Average GC content over each base of all reads.

        loading..

        N content

        Average N content over each base of all reads.

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        MultiQC v1.10.1 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.