Example output using the minimize species removed selection criterion
infile = here("docs", "data", "trees", "paring", paste("min-spec-paring-", tree_type, "-exempt-2", sep=""), paste("min-spec-paring-", tree_type, "-exempt-2.log", sep=""))
# Path to the paring log file for the current tree type
in_data = read.csv(infile, header=T, sep="\t", comment.char="#")
# Read the data from the log file
exempt_branches = read.csv(here("docs", "data", "trees", "paring", paste(tree_type, "-exempt-branches.txt", sep="")), comment.char="#")
names(exempt_branches) = c("branch")
if(tree_type == "astral"){
final_col_branches = read.csv(here("docs", "data", "trees", "paring", paste(tree_type, "-pared-2-colonization-branches.txt", sep="")), comment.char="#")
names(final_col_branches) = c("label", "geo")
}
in_str = read_file(infile)
cat(in_str)
## # Tree pruning with heuristic metrics.
## # Version Beta 1.0 released on October 2021
## # pare was developed by Jeffrey Good, Gregg Thomas
## #
## # The date and time at the start is: 11.18.2021 | 08:34:44
## # Using Python version: 3.9.4
## #
## # The program was called as: pare.py -t full_coding_iqtree_astral.cf.rooted.tree -o min-spec-paring-astral-exempt-2 --overwrite -i 30 -e astral-exempt-branches.txt -g 50
## #
## # -----------------------------------------------------------------------------------------------------------------------------
## # INPUT/OUTPUT INFO:
## # Tree input type: file
## # Tree file full_coding_iqtree_astral.cf.rooted.tree
## # Output directory: min-spec-paring-astral-exempt-2
## # Log file: min-spec-paring-astral-exempt-2.log
## # -----------------------------------------------------------------------------------------------------------------------------
## # OPTIONS INFO:
## # Option Current setting Current action
## # Branch length percentile (-b) 10 Branches will be considered for paring each iteration if they fall below this percentile of all branch lengths.
## # Lower gCF threshold (-g) 50 Branches will be considered for paring each iteration if they have a gCF lower than this.
## # Maximum iterations of paring (-i) 30 The program will stop paring after this many iterations, regardless of other settings.
## # Total maximum tips to prune (-s) Unlimited The program will stop paring after this tips have been pruned, regardless of other settings.
## # Maximum tips to prune per branch (-m) 10 Branches selected to prune that have more than this many species descending will be retained.
## # -e astral-exempt-branches.txt pare will exempt the branches listed in this file from pruning.
## # --overwrite True pare will OVERWRITE the existing files in the specified output directory.
## # --quiet False Time, memory, and status info will be printed to the screen while pare is running.
## # -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
## # Date Time Current step Status Elapsed time (s) Step time (s) Current mem usage (MB) Virtual mem usage (MB)
## # -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
## # 11.18.2021 08:34:45 Reading input file Success: file read 0.28698 0.01067 24.35547 5485.02344
## # 11.18.2021 08:34:45 Parsing input tree Success: tree with 188 tips and 186 internal nodes read. 0.49631 0.20626 24.87109 5485.27344
## # INFO: Original tree with node labels: ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>)<5>)<6>,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>)<8>)<9>,(((Hyorhinomys_stuempkei_JAE4661,(Sommeromys_macrorhinos_Z21740,(Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>)<11>)<12>,((Paucidentomys_vermidax_Z21914,Echiothrix_centrosa_Z27993)<13>,(Tateomys_rhinogradoides_Z21785,(Melasmothrix_naso_Z21808,Tateomys_macrocercus_Z21834)<14>)<15>)<16>)<17>,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<18>,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<19>)<20>)<21>)<22>)<23>)<24>,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<25>,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<26>,((Rattus_exulans_sample1,(rnor6,(Rattus_argentiventer_LSUMZ38199,Rattus_hoffmanni_LSUMZ39187)<27>)<28>)<29>,(Kadarsanomys_sodyi_MZB-Sample,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<30>,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,((Rattus_leucopus_sample1,Rattus_praetor_sample1)<31>,(Rattus_lutreolus_sample2,(Rattus_tunneyi_RAT130,(Rattus_colletti_RAT25,Rattus_villosissimus_sample1)<32>)<33>)<34>)<35>)<36>)<37>)<38>)<39>)<40>)<41>,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<42>,(Bullimus_bagobus_JAE1712,(Papagomys_armandvillei_WAMM32592,(Halmaheramys_bokimekot_33262-WD225,((Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<43>)<44>,(((Taeromys_callitrichus_LSUMZ37153,Taeromys_punicans_MVZ225815)<45>,(Taeromys_hamatus_NMVZ63317,Taeromys_taerae_LSUMZ39224)<46>)<47>,(Genus_sp-nov_NMVZ21816,((Taeromys_celebensis_NMVZ20637,Paruromys_dominator_JAE4870)<48>,(Eropeplus_canus_NMVZ21733,Lenomys_meyeri_LSUMZ39079)<49>)<50>)<51>)<52>)<53>)<54>)<55>)<56>)<57>)<58>)<59>)<60>)<61>)<62>,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Rhynchomys_isarogensis_JAE2195,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<63>)<64>)<65>)<66>,((Anisomys_imitator_ABTC45107,(Lorentzimys_nouhuysi_ABTC-46314,(Macruromys_major_ABTC43909,(Chiruromys_vates_ABTC43096,(Hyomys_goliath_ABTC42697,Pogonomys_macrourus_ABTC43144)<67>)<68>)<69>)<70>)<71>,(Coccymys_ruemmleri_ABTC49489,(((Mammelomys_lanosus_ABTC47208,Xenuromys_barbatus_ABTC129204)<72>,(Mallomys_rothschildi_ABTC47402,(Abeomelomys_sevia_KUM161018,Pogonomelomys_mayeri_AMM21849)<73>)<74>)<75>,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<76>)<77>)<78>,((Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<79>)<80>,(Paraleptomys_wilhelmina_H126-ABTC133716,(Mirzamys_louiseae_ABTC133754,Leptomys_elegans_ABTC45741)<81>)<82>)<83>)<84>,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<85>,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<86>)<87>,((Leporillus_conditor_ABTC13335,Leporillus_apicalis_C90)<88>,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<89>,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<90>)<91>)<92>)<93>,(((Zyzomys_pedunculatus_Z34925,Zyzomys_woodwardi_WAMM21724)<94>,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<95>)<96>)<97>,((Leggadina_lakedownensis_WAMM21623,Leggadina_forresti_WAMM62323)<98>,(((Pseudomys_calabyi_U4324,(Pseudomys_chapmani_WAMM29440,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<99>)<100>)<101>,(Notomys_cervinus_M22857,(Notomys_mitchellii_M21518,(Notomys_fuscus_M22830,(Notomys_aquilo_M-32455,Notomys_alexis_U1308)<102>)<103>)<104>)<105>)<106>,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<107>)<108>,((Pseudomys_gracilicaudatus_ABTC08163,Pseudomys_nanus_U1448)<109>,((Pseudomys_oralis_RAT7,(Pseudomys_desertor_ABTC41464,Pseudomys_shortridgei_Z25113)<110>)<111>,(Pseudomys_australis_M25541,(Mastacomys_fuscus_M13957,(Pseudomys_higginsi_UC1421,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,(Pseudomys_bolami_ABTC107389,Pseudomys_novaehollandiae_ABTC08140)<112>)<113>)<114>)<115>)<116>)<117>)<118>)<119>)<120>)<121>)<122>)<123>)<124>)<125>)<126>)<127>)<128>)<129>)<130>)<131>)<132>,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<133>,(Oenomys_hypoxanthus_LSUMZ37838,((Hybomys_planifrons_R24117,((Hybomys_univittatus_TCD4026,Hybomys_lunaris_LSUMZ37734)<134>,(Stochomys_longicaudatus_MNHN1999459,Dephomys_defua_MNHNR24062)<135>)<136>)<137>,((Micaelemys_namaquensis_MNHN1987009,((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<138>,(Thallomys_paedulcus_FMNH158089,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<139>)<140>)<141>)<142>)<143>,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<144>,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<145>)<146>,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<147>)<148>)<149>)<150>)<151>)<152>)<153>)<154>)<155>)<156>)<157>,((Malacomys_longipes_TCD4253,Apodemus_sylvaticus_SMG3823)<158>,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<159>,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<160>)<161>)<162>)<163>,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<164>)<165>)<166>,(Mus_pahari_10460X1,((Mus_minutoides_10460X2,Mus_musculoides_LSUMZ37820)<167>,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<168>)<169>,((Mus_spretus_10460X4,(Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<170>)<171>,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<172>)<173>,(Mus_musculus-domesticus_10460X15,mm10)<174>)<175>)<176>)<177>)<178>)<179>)<180>)<181>)<182>)<183>)<184>)<185>)<186>)<187>
## # 11.18.2021 08:34:45 Reading exempt branches Success: 15 branches will be exempt from paring. 0.50893 0.0066 24.87109 5485.27344
## # --------------------------------------------------
## # INFO: Branch <11> chosen for paring. Branch Sommeromys_macrorhinos_Z21740 will be pruned and remove 1 species
## # INFO: Branch <14> chosen for paring. Branch Melasmothrix_naso_Z21808 will be pruned and remove 1 species
## # INFO: Branch <28> chosen for paring. Branch rnor6 chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <28> chosen for paring. Branch <27> will be pruned and remove 2 species
## # INFO: Branch <31> chosen for paring. Branch Rattus_leucopus_sample1 will be pruned and remove 1 species
## # INFO: Branch <33> chosen for paring. Branch Rattus_tunneyi_RAT130 will be pruned and remove 1 species
## # INFO: Branch <49> chosen for paring. Branch Eropeplus_canus_NMVZ21733 will be pruned and remove 1 species
## # INFO: Branch <51> chosen for paring. Branch Genus_sp-nov_NMVZ21816 will be pruned and remove 1 species
## # INFO: Branch <55> chosen for paring. Branch Papagomys_armandvillei_WAMM32592 will be pruned and remove 1 species
## # INFO: Branch <69> chosen for paring. Branch Macruromys_major_ABTC43909 will be pruned and remove 1 species
## # INFO: Branch <70> chosen for paring. Branch Lorentzimys_nouhuysi_ABTC-46314 will be pruned and remove 1 species
## # INFO: Branch <102> chosen for paring. Branch Notomys_aquilo_M-32455 will be pruned and remove 1 species
## # INFO: Branch <103> chosen for paring. Branch Notomys_fuscus_M22830 will be pruned and remove 1 species
## # INFO: Branch <112> chosen for paring. Branch Pseudomys_bolami_ABTC107389 will be pruned and remove 1 species
## # INFO: Branch <119> chosen for paring. Branch <109> will be pruned and remove 2 species
## # INFO: Branch <123> chosen for paring. Branch <98> will be pruned and remove 2 species
## # INFO: Branch <127> chosen for paring. Branch <75> will be pruned and remove 5 species
## # INFO: Branch <141> chosen for paring. Branch Thallomys_paedulcus_FMNH158089 will be pruned and remove 1 species
## # INFO: Branch <153> chosen for paring. Branch <137> will be pruned and remove 5 species
## # 11.18.2021 08:34:49 Paring iteration 1 Success: 29 tips removed, 18 branches pared. 5.1932 4.67918 25.54688 5485.52344
## # INFO: Branch length threshold for iteration: 0.11801306960000002
## # 11.18.2021 08:34:50 Writing iteration 1 files Success 5.33349 0.1334 25.54688 5485.52344
## # --------------------------------------------------
## # INFO: Branch <11> chosen for paring. Branch Hyorhinomys_stuempkei_JAE4661 will be pruned and remove 1 species
## # INFO: Branch <33> chosen for paring. Branch Kadarsanomys_sodyi_MZB-Sample will be pruned and remove 1 species
## # INFO: Branch <45> chosen for paring. Branch <38> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <45> chosen for paring. Branch <44> will be pruned and remove 7 species
## # INFO: Branch <46> chosen for paring. Branch Halmaheramys_bokimekot_33262-WD225 will be pruned and remove 1 species
## # INFO: Branch <58> chosen for paring. Branch Hyomys_goliath_ABTC42697 will be pruned and remove 1 species
## # INFO: Branch <60> chosen for paring. Branch Anisomys_imitator_ABTC45107 will be pruned and remove 1 species
## # INFO: Branch <67> chosen for paring. Branch Paraleptomys_wilhelmina_H126-ABTC133716 will be pruned and remove 1 species
## # INFO: Branch <84> chosen for paring. Branch Pseudomys_chapmani_WAMM29440 will be pruned and remove 1 species
## # INFO: Branch <88> chosen for paring. Branch <87> will be pruned and remove 3 species
## # INFO: Branch <154> chosen for paring. Branch <128> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <154> chosen for paring. Sister branch <153> is also exempt. Skipping paring.
## # 11.18.2021 08:34:52 Paring iteration 2 Success: 17 tips removed, 9 branches pared. 7.52609 2.18683 25.55078 5485.52344
## # INFO: Branch length threshold for iteration: 0.18519409113000002
## # 11.18.2021 08:34:52 Writing iteration 2 files Success 7.53958 0.00709 25.55078 5485.52344
## # --------------------------------------------------
## # INFO: Branch <11> chosen for paring. Branch Paucidentomys_vermidax_Z21914 will be pruned and remove 1 species
## # INFO: Branch <37> chosen for paring. Branch Bullimus_bagobus_JAE1712 will be pruned and remove 1 species
## # INFO: Branch <55> chosen for paring. Branch <54> will be pruned and remove 2 species
## # INFO: Branch <66> chosen for paring. Branch Zyzomys_pedunculatus_Z34925 will be pruned and remove 1 species
## # INFO: Branch <78> chosen for paring. Branch Pseudomys_higginsi_UC1421 will be pruned and remove 1 species
## # INFO: Branch <79> chosen for paring. Branch Mastacomys_fuscus_M13957 will be pruned and remove 1 species
## # INFO: Branch <98> chosen for paring. Branch Micaelemys_namaquensis_MNHN1987009 will be pruned and remove 1 species
## # INFO: Branch <112> chosen for paring. Branch Malacomys_longipes_TCD4253 will be pruned and remove 1 species
## # INFO: Branch <137> chosen for paring. Branch <111> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <137> chosen for paring. Sister branch <136> is also exempt. Skipping paring.
## # 11.18.2021 08:34:53 Paring iteration 3 Success: 9 tips removed, 8 branches pared. 8.84672 1.30228 25.55078 5485.52344
## # INFO: Branch length threshold for iteration: 0.22262737185
## # 11.18.2021 08:34:53 Writing iteration 3 files Success 8.94529 0.09235 25.55078 5485.52344
## # --------------------------------------------------
## # INFO: Branch <27> chosen for paring. Branch Rattus_praetor_sample1 chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <27> chosen for paring. Branch <26> will be pruned and remove 3 species
## # INFO: Branch <39> chosen for paring. Branch <20> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <39> chosen for paring. Sister branch <38> is also exempt. Skipping paring.
## # INFO: Branch <43> chosen for paring. Branch Rhynchomys_isarogensis_JAE2195 will be pruned and remove 1 species
## # INFO: Branch <116> chosen for paring. Branch Mus_spretus_10460X4 will be pruned and remove 1 species
## # INFO: Branch <128> chosen for paring. Branch <103> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <128> chosen for paring. Sister branch <127> is also exempt. Skipping paring.
## # 11.18.2021 08:34:54 Paring iteration 4 Success: 5 tips removed, 3 branches pared. 9.71368 0.76215 25.55078 5485.52344
## # INFO: Branch length threshold for iteration: 0.24650996098000003
## # 11.18.2021 08:34:54 Writing iteration 4 files Success 9.74965 0.0294 25.55078 5485.52344
## # --------------------------------------------------
## # INFO: Branch <36> chosen for paring. Branch <20> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <36> chosen for paring. Sister branch <35> is also exempt. Skipping paring.
## # INFO: Branch <52> chosen for paring. Branch Leporillus_conditor_ABTC13335 will be pruned and remove 1 species
## # INFO: Branch <70> chosen for paring. Branch <66> will be pruned and remove 3 species
## # INFO: Branch <119> chosen for paring. Branch <108> will be pruned and remove 2 species
## # INFO: Branch <123> chosen for paring. Branch <99> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <123> chosen for paring. Sister branch <122> is also exempt. Skipping paring.
## # 11.18.2021 08:34:55 Paring iteration 5 Success: 6 tips removed, 3 branches pared. 10.62859 0.87367 25.55078 5485.52344
## # INFO: Branch length threshold for iteration: 0.25607892996
## # 11.18.2021 08:34:55 Writing iteration 5 files Success 10.64146 0.00737 25.55078 5485.52344
## # --------------------------------------------------
## # INFO: Branch <12> chosen for paring. Branch Echiothrix_centrosa_Z27993 will be pruned and remove 1 species
## # INFO: Branch <36> chosen for paring. Branch <20> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <36> chosen for paring. Sister branch <35> is also exempt. Skipping paring.
## # INFO: Branch <52> chosen for paring. Branch Conilurus_albipes_NMV-c7585 will be pruned and remove 1 species
## # INFO: Branch <117> chosen for paring. Branch <95> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <117> chosen for paring. Sister branch <116> is also exempt. Skipping paring.
## # 11.18.2021 08:34:55 Paring iteration 6 Success: 2 tips removed, 2 branches pared. 11.12207 0.47566 25.55078 5485.52344
## # INFO: Branch length threshold for iteration: 0.27629215901
## # 11.18.2021 08:34:55 Writing iteration 6 files Success 11.13543 0.00717 25.55078 5485.52344
## # --------------------------------------------------
## # INFO: Branch <35> chosen for paring. Branch <19> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <35> chosen for paring. Sister branch <34> is also exempt. Skipping paring.
## # INFO: Branch <89> chosen for paring. Branch <80> will be pruned and remove 5 species
## # INFO: Branch <97> chosen for paring. Branch Mastomys_natalensis_T4162 will be pruned and remove 1 species
## # INFO: Branch <115> chosen for paring. Branch <93> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <115> chosen for paring. Sister branch <114> is also exempt. Skipping paring.
## # 11.18.2021 08:34:56 Paring iteration 7 Success: 6 tips removed, 2 branches pared. 12.02309 0.88249 25.55078 5485.52344
## # INFO: Branch length threshold for iteration: 0.28606949474
## # 11.18.2021 08:34:56 Writing iteration 7 files Success 12.03553 0.00648 25.55078 5485.52344
## # --------------------------------------------------
## # INFO: Branch <35> chosen for paring. Branch <19> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <35> chosen for paring. Sister branch <34> is also exempt. Skipping paring.
## # INFO: Branch <50> chosen for paring. Branch <48> will be pruned and remove 2 species
## # INFO: Branch <65> chosen for paring. Branch <61> will be pruned and remove 3 species
## # INFO: Branch <109> chosen for paring. Branch <88> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <109> chosen for paring. Sister branch <108> is also exempt. Skipping paring.
## # 11.18.2021 08:34:57 Paring iteration 8 Success: 5 tips removed, 2 branches pared. 12.74587 0.70546 25.55469 5485.52344
## # INFO: Branch length threshold for iteration: 0.29363028302
## # 11.18.2021 08:34:57 Writing iteration 8 files Success 12.75974 0.00742 25.55469 5485.52344
## # --------------------------------------------------
## # INFO: Branch <35> chosen for paring. Branch <19> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <35> chosen for paring. Sister branch <34> is also exempt. Skipping paring.
## # INFO: Branch <104> chosen for paring. Branch <83> chosen for pruning, but is exempt. Switching to sister branch.
## # INFO: Branch <104> chosen for paring. Sister branch <103> is also exempt. Skipping paring.
## # 11.18.2021 08:34:57 Paring iteration 9 Success: No branches pared this iteration. Exiting. 12.90935 0.14456 25.55469 5485.52344
## # INFO: Branch length threshold for iteration: 0.3079614275
## # --------------------------------------------------
## iteration branch length threshold branches pared tips pruned tree
## 0 NA NA NA ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Hyorhinomys_stuempkei_JAE4661,(Sommeromys_macrorhinos_Z21740,(Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.115289216)<11>_18.6:0.0463941116)<12>_17.0:0.1220646428,((Paucidentomys_vermidax_Z21914,Echiothrix_centrosa_Z27993)<13>_30.2:0.2026624819,(Tateomys_rhinogradoides_Z21785,(Melasmothrix_naso_Z21808,Tateomys_macrocercus_Z21834)<14>_29.3:0.0741214951)<15>_58.6:0.9550136585)<16>_25.6:0.2611340631)<17>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<18>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<19>_91.0:2.3598216167)<20>_77.0:1.3573337145)<21>_43.1:0.3412238823)<22>_49.1:0.5965268673)<23>_50.8:0.5822530386)<24>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<25>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<26>_75.9:1.4602776295,((Rattus_exulans_sample1,(rnor6,(Rattus_argentiventer_LSUMZ38199,Rattus_hoffmanni_LSUMZ39187)<27>_46.7:0.5723828761)<28>_20.8:0.0624462765)<29>_32.6:0.4661106307,(Kadarsanomys_sodyi_MZB-Sample,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<30>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,((Rattus_leucopus_sample1,Rattus_praetor_sample1)<31>_16.7:0.0591261198,(Rattus_lutreolus_sample2,(Rattus_tunneyi_RAT130,(Rattus_colletti_RAT25,Rattus_villosissimus_sample1)<32>_48.5:0.6113894509)<33>_18.1:0.0206682617)<34>_23.5:0.2764236886)<35>_26.8:0.2385611366)<36>_42.1:0.5016899299)<37>_42.2:0.6163687721)<38>_21.7:0.1915455609)<39>_16.9:0.1644231217)<40>_29.8:0.3841747735)<41>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<42>_57.3:0.8514222833,(Bullimus_bagobus_JAE1712,(Papagomys_armandvillei_WAMM32592,(Halmaheramys_bokimekot_33262-WD225,((Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<43>_30.3:0.3643412873)<44>_31.1:0.2885941952,(((Taeromys_callitrichus_LSUMZ37153,Taeromys_punicans_MVZ225815)<45>_71.0:1.2813127992,(Taeromys_hamatus_NMVZ63317,Taeromys_taerae_LSUMZ39224)<46>_47.4:0.526879957)<47>_41.6:0.5971213939,(Genus_sp-nov_NMVZ21816,((Taeromys_celebensis_NMVZ20637,Paruromys_dominator_JAE4870)<48>_24.8:0.1913829719,(Eropeplus_canus_NMVZ21733,Lenomys_meyeri_LSUMZ39079)<49>_14.6:0.0448175773)<50>_17.8:0.2424803494)<51>_9.32:0.0367235914)<52>_15.9:0.2723279638)<53>_13.0:0.1448434154)<54>_9.67:0.1461777993)<55>_5.01:0.0257560962)<56>_15.5:0.1888332236)<57>_26.3:0.3148108749)<58>_55.5:0.9917213602)<59>_69.4:1.6745340036)<60>_32.5:0.2418310363)<61>_71.0:1.6163767038)<62>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Rhynchomys_isarogensis_JAE2195,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<63>_90.1:2.2605282306)<64>_40.6:0.2270253617)<65>_63.6:0.8953226351)<66>_75.4:1.5363045693,((Anisomys_imitator_ABTC45107,(Lorentzimys_nouhuysi_ABTC-46314,(Macruromys_major_ABTC43909,(Chiruromys_vates_ABTC43096,(Hyomys_goliath_ABTC42697,Pogonomys_macrourus_ABTC43144)<67>_26.9:0.1516553011)<68>_22.1:0.2570456052)<69>_12.6:0.0901281808)<70>_9.99:0.0769045112)<71>_13.9:0.1489541214,(Coccymys_ruemmleri_ABTC49489,(((Mammelomys_lanosus_ABTC47208,Xenuromys_barbatus_ABTC129204)<72>_65.6:0.9447463564,(Mallomys_rothschildi_ABTC47402,(Abeomelomys_sevia_KUM161018,Pogonomelomys_mayeri_AMM21849)<73>_65.3:0.9362176111)<74>_38.0:0.3012511489)<75>_57.2:1.0414041831,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<76>_47.7:0.3648280463)<77>_70.7:1.0891800778)<78>_70.2:1.3009107858,((Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<79>_58.8:0.7579029078)<80>_37.4:0.4392546623,(Paraleptomys_wilhelmina_H126-ABTC133716,(Mirzamys_louiseae_ABTC133754,Leptomys_elegans_ABTC45741)<81>_27.1:0.1852027012)<82>_18.6:0.1232145397)<83>_24.7:0.2075207395)<84>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<85>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<86>_82.4:1.8201101793)<87>_34.0:0.289058951,((Leporillus_conditor_ABTC13335,Leporillus_apicalis_C90)<88>_34.3:0.2470298415,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<89>_39.8:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<90>_68.1:1.0376499343)<91>_44.2:0.5344044707)<92>_52.2:0.8454501739)<93>_30.9:0.3462089248,(((Zyzomys_pedunculatus_Z34925,Zyzomys_woodwardi_WAMM21724)<94>_36.5:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<95>_51.3:0.5034030811)<96>_47.1:0.5542933514)<97>_64.6:1.2613638418,((Leggadina_lakedownensis_WAMM21623,Leggadina_forresti_WAMM62323)<98>_88.2:2.2628832125,(((Pseudomys_calabyi_U4324,(Pseudomys_chapmani_WAMM29440,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<99>_45.3:0.4314929265)<100>_30.4:0.1248958893)<101>_65.6:1.2904292824,(Notomys_cervinus_M22857,(Notomys_mitchellii_M21518,(Notomys_fuscus_M22830,(Notomys_aquilo_M-32455,Notomys_alexis_U1308)<102>_23.8:0.0723183981)<103>_22.4:0.0569880912)<104>_64.5:1.1201139523)<105>_43.3:0.5697754574)<106>_22.1:0.1851904011,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<107>_74.9:1.4010924273)<108>_32.0:0.3655304624,((Pseudomys_gracilicaudatus_ABTC08163,Pseudomys_nanus_U1448)<109>_75.6:1.4916987908,((Pseudomys_oralis_RAT7,(Pseudomys_desertor_ABTC41464,Pseudomys_shortridgei_Z25113)<110>_72.7:1.2878584658)<111>_26.8:0.3018478021,(Pseudomys_australis_M25541,(Mastacomys_fuscus_M13957,(Pseudomys_higginsi_UC1421,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,(Pseudomys_bolami_ABTC107389,Pseudomys_novaehollandiae_ABTC08140)<112>_27.2:0.0786021292)<113>_38.3:0.3741615204)<114>_50.6:0.7699887251)<115>_25.0:0.2198974977)<116>_20.9:0.2035419953)<117>_19.7:0.2788384631)<118>_8.64:0.1391306498)<119>_10.9:0.1119357098)<120>_17.5:0.2931795082)<121>_24.7:0.3598168238)<122>_45.2:0.902366316)<123>_17.1:0.0632597052)<124>_31.9:0.4993296351)<125>_52.2:0.9832235007)<126>_61.5:1.3968767248)<127>_19.1:0.096525636)<128>_28.1:0.4041672067)<129>_32.7:0.4572004896)<130>_46.0:0.6498982242)<131>_60.7:1.0729519431)<132>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<133>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,((Hybomys_planifrons_R24117,((Hybomys_univittatus_TCD4026,Hybomys_lunaris_LSUMZ37734)<134>_92.4:2.5441121277,(Stochomys_longicaudatus_MNHN1999459,Dephomys_defua_MNHNR24062)<135>_68.6:0.9202386656)<136>_70.1:1.2100345465)<137>_39.1:0.5039936469,((Micaelemys_namaquensis_MNHN1987009,((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<138>_73.2:1.3149706614,(Thallomys_paedulcus_FMNH158089,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<139>_60.3:0.7945469801)<140>_40.8:0.4715947592)<141>_15.5:0.0259463314)<142>_25.9:0.364939479)<143>_18.0:0.2155136206,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<144>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<145>_73.6:1.1276281661)<146>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<147>_83.3:1.6930748463)<148>_69.4:1.0684586717)<149>_45.6:0.4036812336)<150>_73.6:1.5413434646)<151>_30.9:0.3693874568)<152>_15.4:0.1999985759)<153>_15.4:0.0790955209)<154>_58.6:1.085258536)<155>_61.7:1.0889873501)<156>_53.9:0.8472482432)<157>_31.6:0.3505836959,((Malacomys_longipes_TCD4253,Apodemus_sylvaticus_SMG3823)<158>_32.8:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<159>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<160>_68.9:0.9263978723)<161>_62.4:0.8789694589)<162>_37.8:0.2769121752)<163>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<164>_75.9:1.1887971512)<165>_68.8:1.0439667256)<166>_86.0:2.4876875761,(Mus_pahari_10460X1,((Mus_minutoides_10460X2,Mus_musculoides_LSUMZ37820)<167>_92.7:2.5425212627,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<168>_61.7:0.7132476868)<169>_58.4:0.6630723193,((Mus_spretus_10460X4,(Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<170>_62.5:0.9203018035)<171>_37.6:0.225357246,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<172>_49.7:0.5423114712)<173>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10)<174>:0.7981842885)<175>_60.9:0.9608772308)<176>_60.4:1.665000483)<177>_77.3:1.7311567402)<178>_78.8:0.2477784982)<179>_36.1:0.2527088412)<180>_37.7:2.2937394322)<181>_84.3:0.4510519503)<182>_40.4:0.6485692565)<183>_40.4:0.1586408708)<184>_20.9:0.4625474844)<185>_38.2:1.4012078772)<186>_73.6:0.836628)<187>;
## 1 0.11801306960000002 18 29 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Hyorhinomys_stuempkei_JAE4661,(Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.1616833276)<11>_17.0:0.1220646428,((Paucidentomys_vermidax_Z21914,Echiothrix_centrosa_Z27993)<12>_30.2:0.2026624819,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<13>_58.6:0.9550136585)<14>_25.6:0.2611340631)<15>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<16>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<17>_91.0:2.3598216167)<18>_77.0:1.3573337145)<19>_43.1:0.3412238823)<20>_49.1:0.5965268673)<21>_50.8:0.5822530386)<22>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<23>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<24>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<25>_32.6:0.4661106307,(Kadarsanomys_sodyi_MZB-Sample,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<26>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,(Rattus_praetor_sample1:0.0591261198,(Rattus_lutreolus_sample2,(Rattus_colletti_RAT25,Rattus_villosissimus_sample1)<27>_48.5:0.6320577126)<28>_23.5:0.2764236886)<29>_26.8:0.2385611366)<30>_42.1:0.5016899299)<31>_42.2:0.6163687721)<32>_21.7:0.1915455609)<33>_16.9:0.1644231217)<34>_29.8:0.3841747735)<35>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<36>_57.3:0.8514222833,(Bullimus_bagobus_JAE1712,(Halmaheramys_bokimekot_33262-WD225,((Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<37>_30.3:0.3643412873)<38>_31.1:0.2885941952,(((Taeromys_callitrichus_LSUMZ37153,Taeromys_punicans_MVZ225815)<39>_71.0:1.2813127992,(Taeromys_hamatus_NMVZ63317,Taeromys_taerae_LSUMZ39224)<40>_47.4:0.526879957)<41>_41.6:0.5971213939,((Taeromys_celebensis_NMVZ20637,Paruromys_dominator_JAE4870)<42>_24.8:0.1913829719,Lenomys_meyeri_LSUMZ39079:0.0448175773)<43>_17.8:0.2792039408)<44>_15.9:0.2723279638)<45>_13.0:0.1448434154)<46>_9.67:0.1719338955)<47>_15.5:0.1888332236)<48>_26.3:0.3148108749)<49>_55.5:0.9917213602)<50>_69.4:1.6745340036)<51>_32.5:0.2418310363)<52>_71.0:1.6163767038)<53>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Rhynchomys_isarogensis_JAE2195,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<54>_90.1:2.2605282306)<55>_40.6:0.2270253617)<56>_63.6:0.8953226351)<57>_75.4:1.5363045693,((Anisomys_imitator_ABTC45107,(Chiruromys_vates_ABTC43096,(Hyomys_goliath_ABTC42697,Pogonomys_macrourus_ABTC43144)<58>_26.9:0.1516553011)<59>_22.1:0.4240782972)<60>_13.9:0.1489541214,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<61>_47.7:0.3648280463)<62>_70.7:1.0891800778)<63>_70.2:1.3009107858,((Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<64>_58.8:0.7579029078)<65>_37.4:0.4392546623,(Paraleptomys_wilhelmina_H126-ABTC133716,(Mirzamys_louiseae_ABTC133754,Leptomys_elegans_ABTC45741)<66>_27.1:0.1852027012)<67>_18.6:0.1232145397)<68>_24.7:0.2075207395)<69>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<70>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<71>_82.4:1.8201101793)<72>_34.0:0.289058951,((Leporillus_conditor_ABTC13335,Leporillus_apicalis_C90)<73>_34.3:0.2470298415,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<74>_39.8:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<75>_68.1:1.0376499343)<76>_44.2:0.5344044707)<77>_52.2:0.8454501739)<78>_30.9:0.3462089248,(((Zyzomys_pedunculatus_Z34925,Zyzomys_woodwardi_WAMM21724)<79>_36.5:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<80>_51.3:0.5034030811)<81>_47.1:0.5542933514)<82>_64.6:1.2613638418,(((Pseudomys_calabyi_U4324,(Pseudomys_chapmani_WAMM29440,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<83>_45.3:0.4314929265)<84>_30.4:0.1248958893)<85>_65.6:1.2904292824,(Notomys_cervinus_M22857,(Notomys_mitchellii_M21518,Notomys_alexis_U1308:0.1293064893)<86>_64.5:1.1201139523)<87>_43.3:0.5697754574)<88>_22.1:0.1851904011,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<89>_74.9:1.4010924273)<90>_32.0:0.3655304624,((Pseudomys_oralis_RAT7,(Pseudomys_desertor_ABTC41464,Pseudomys_shortridgei_Z25113)<91>_72.7:1.2878584658)<92>_26.8:0.3018478021,(Pseudomys_australis_M25541,(Mastacomys_fuscus_M13957,(Pseudomys_higginsi_UC1421,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<93>_38.3:0.3741615204)<94>_50.6:0.7699887251)<95>_25.0:0.2198974977)<96>_20.9:0.2035419953)<97>_19.7:0.2788384631)<98>_8.64:0.2510663596)<99>_17.5:0.2931795082)<100>_24.7:0.3598168238)<101>_45.2:0.9656260212)<102>_31.9:0.4993296351)<103>_52.2:0.9832235007)<104>_61.5:1.4934023608)<105>_28.1:0.4041672067)<106>_32.7:0.4572004896)<107>_46.0:0.6498982242)<108>_60.7:1.0729519431)<109>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<110>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,((Micaelemys_namaquensis_MNHN1987009,((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<111>_73.2:1.3149706614,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<112>_60.3:0.7945469801)<113>_40.8:0.4975410906)<114>_25.9:0.364939479)<115>_18.0:0.2155136206,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<116>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<117>_73.6:1.1276281661)<118>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<119>_83.3:1.6930748463)<120>_69.4:1.0684586717)<121>_45.6:0.4036812336)<122>_73.6:1.5413434646)<123>_30.9:0.3693874568)<124>_15.4:0.27909409679999997)<125>_58.6:1.085258536)<126>_61.7:1.0889873501)<127>_53.9:0.8472482432)<128>_31.6:0.3505836959,((Malacomys_longipes_TCD4253,Apodemus_sylvaticus_SMG3823)<129>_32.8:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<130>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<131>_68.9:0.9263978723)<132>_62.4:0.8789694589)<133>_37.8:0.2769121752)<134>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<135>_75.9:1.1887971512)<136>_68.8:1.0439667256)<137>_86.0:2.4876875761,(Mus_pahari_10460X1,((Mus_minutoides_10460X2,Mus_musculoides_LSUMZ37820)<138>_92.7:2.5425212627,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<139>_61.7:0.7132476868)<140>_58.4:0.6630723193,((Mus_spretus_10460X4,(Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<141>_62.5:0.9203018035)<142>_37.6:0.225357246,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<143>_49.7:0.5423114712)<144>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<145>:0.7981842885)<146>_60.9:0.9608772308)<147>_60.4:1.665000483)<148>_77.3:1.7311567402)<149>_78.8:0.2477784982)<150>_36.1:0.2527088412)<151>_37.7:2.2937394322)<152>_84.3:0.4510519503)<153>_40.4:0.6485692565)<154>_40.4:0.1586408708)<155>_20.9:0.4625474844)<156>_38.2:1.4012078772)<157>_73.6:0.836628)<158>;
## 2 0.18519409113000002 9 17 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,((Paucidentomys_vermidax_Z21914,Echiothrix_centrosa_Z27993)<11>_30.2:0.2026624819,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<12>_58.6:0.9550136585)<13>_25.6:0.2611340631)<14>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<15>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<16>_91.0:2.3598216167)<17>_77.0:1.3573337145)<18>_43.1:0.3412238823)<19>_49.1:0.5965268673)<20>_50.8:0.5822530386)<21>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<22>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<23>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<24>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<25>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,(Rattus_praetor_sample1:0.0591261198,(Rattus_lutreolus_sample2,(Rattus_colletti_RAT25,Rattus_villosissimus_sample1)<26>_48.5:0.6320577126)<27>_23.5:0.2764236886)<28>_26.8:0.2385611366)<29>_42.1:0.5016899299)<30>_42.2:0.6163687721)<31>_21.7:0.35596868260000003)<32>_29.8:0.3841747735)<33>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<34>_57.3:0.8514222833,(Bullimus_bagobus_JAE1712,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<35>_30.3:0.3643412873)<36>_31.1:0.6053715061)<37>_15.5:0.1888332236)<38>_26.3:0.3148108749)<39>_55.5:0.9917213602)<40>_69.4:1.6745340036)<41>_32.5:0.2418310363)<42>_71.0:1.6163767038)<43>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Rhynchomys_isarogensis_JAE2195,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<44>_90.1:2.2605282306)<45>_40.6:0.2270253617)<46>_63.6:0.8953226351)<47>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<48>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<49>_47.7:0.3648280463)<50>_70.7:1.0891800778)<51>_70.2:1.3009107858,((Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<52>_58.8:0.7579029078)<53>_37.4:0.4392546623,(Mirzamys_louiseae_ABTC133754,Leptomys_elegans_ABTC45741)<54>_27.1:0.3084172409)<55>_24.7:0.2075207395)<56>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<57>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<58>_82.4:1.8201101793)<59>_34.0:0.289058951,((Leporillus_conditor_ABTC13335,Leporillus_apicalis_C90)<60>_34.3:0.2470298415,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<61>_39.8:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<62>_68.1:1.0376499343)<63>_44.2:0.5344044707)<64>_52.2:0.8454501739)<65>_30.9:0.3462089248,(((Zyzomys_pedunculatus_Z34925,Zyzomys_woodwardi_WAMM21724)<66>_36.5:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<67>_51.3:0.5034030811)<68>_47.1:0.5542933514)<69>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<70>_45.3:0.5563888158)<71>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<72>_74.9:1.4010924273)<73>_32.0:0.3655304624,((Pseudomys_oralis_RAT7,(Pseudomys_desertor_ABTC41464,Pseudomys_shortridgei_Z25113)<74>_72.7:1.2878584658)<75>_26.8:0.3018478021,(Pseudomys_australis_M25541,(Mastacomys_fuscus_M13957,(Pseudomys_higginsi_UC1421,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<76>_38.3:0.3741615204)<77>_50.6:0.7699887251)<78>_25.0:0.2198974977)<79>_20.9:0.2035419953)<80>_19.7:0.2788384631)<81>_8.64:0.2510663596)<82>_17.5:0.2931795082)<83>_24.7:0.3598168238)<84>_45.2:0.9656260212)<85>_31.9:0.4993296351)<86>_52.2:0.9832235007)<87>_61.5:1.4934023608)<88>_28.1:0.4041672067)<89>_32.7:0.4572004896)<90>_46.0:0.6498982242)<91>_60.7:1.0729519431)<92>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<93>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,((Micaelemys_namaquensis_MNHN1987009,((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<94>_73.2:1.3149706614,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<95>_60.3:0.7945469801)<96>_40.8:0.4975410906)<97>_25.9:0.364939479)<98>_18.0:0.2155136206,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<99>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<100>_73.6:1.1276281661)<101>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<102>_83.3:1.6930748463)<103>_69.4:1.0684586717)<104>_45.6:0.4036812336)<105>_73.6:1.5413434646)<106>_30.9:0.3693874568)<107>_15.4:0.27909409679999997)<108>_58.6:1.085258536)<109>_61.7:1.0889873501)<110>_53.9:0.8472482432)<111>_31.6:0.3505836959,((Malacomys_longipes_TCD4253,Apodemus_sylvaticus_SMG3823)<112>_32.8:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<113>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<114>_68.9:0.9263978723)<115>_62.4:0.8789694589)<116>_37.8:0.2769121752)<117>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<118>_75.9:1.1887971512)<119>_68.8:1.0439667256)<120>_86.0:2.4876875761,(Mus_pahari_10460X1,((Mus_minutoides_10460X2,Mus_musculoides_LSUMZ37820)<121>_92.7:2.5425212627,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<122>_61.7:0.7132476868)<123>_58.4:0.6630723193,((Mus_spretus_10460X4,(Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<124>_62.5:0.9203018035)<125>_37.6:0.225357246,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<126>_49.7:0.5423114712)<127>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<128>:0.7981842885)<129>_60.9:0.9608772308)<130>_60.4:1.665000483)<131>_77.3:1.7311567402)<132>_78.8:0.2477784982)<133>_36.1:0.2527088412)<134>_37.7:2.2937394322)<135>_84.3:0.4510519503)<136>_40.4:0.6485692565)<137>_40.4:0.1586408708)<138>_20.9:0.4625474844)<139>_38.2:1.4012078772)<140>_73.6:0.836628)<141>;
## 3 0.22262737185 8 9 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,(Echiothrix_centrosa_Z27993:0.2026624819,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<11>_58.6:0.9550136585)<12>_25.6:0.2611340631)<13>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<14>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<15>_91.0:2.3598216167)<16>_77.0:1.3573337145)<17>_43.1:0.3412238823)<18>_49.1:0.5965268673)<19>_50.8:0.5822530386)<20>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<21>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<22>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<23>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<24>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,(Rattus_praetor_sample1:0.0591261198,(Rattus_lutreolus_sample2,(Rattus_colletti_RAT25,Rattus_villosissimus_sample1)<25>_48.5:0.6320577126)<26>_23.5:0.2764236886)<27>_26.8:0.2385611366)<28>_42.1:0.5016899299)<29>_42.2:0.6163687721)<30>_21.7:0.35596868260000003)<31>_29.8:0.3841747735)<32>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<33>_57.3:0.8514222833,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<34>_30.3:0.3643412873)<35>_31.1:0.7942047297)<36>_26.3:0.3148108749)<37>_55.5:0.9917213602)<38>_69.4:1.6745340036)<39>_32.5:0.2418310363)<40>_71.0:1.6163767038)<41>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Rhynchomys_isarogensis_JAE2195,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<42>_90.1:2.2605282306)<43>_40.6:0.2270253617)<44>_63.6:0.8953226351)<45>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<46>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<47>_47.7:0.3648280463)<48>_70.7:1.0891800778)<49>_70.2:1.3009107858,(Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<50>_58.8:0.7579029078)<51>_37.4:0.6467754018)<52>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<53>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<54>_82.4:1.8201101793)<55>_34.0:0.289058951,((Leporillus_conditor_ABTC13335,Leporillus_apicalis_C90)<56>_34.3:0.2470298415,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<57>_39.8:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<58>_68.1:1.0376499343)<59>_44.2:0.5344044707)<60>_52.2:0.8454501739)<61>_30.9:0.3462089248,((Zyzomys_woodwardi_WAMM21724:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<62>_51.3:0.5034030811)<63>_47.1:0.5542933514)<64>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<65>_45.3:0.5563888158)<66>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<67>_74.9:1.4010924273)<68>_32.0:0.3655304624,((Pseudomys_oralis_RAT7,(Pseudomys_desertor_ABTC41464,Pseudomys_shortridgei_Z25113)<69>_72.7:1.2878584658)<70>_26.8:0.3018478021,(Pseudomys_australis_M25541,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<71>_38.3:0.3741615204)<72>_50.6:1.1934282181)<73>_19.7:0.2788384631)<74>_8.64:0.2510663596)<75>_17.5:0.2931795082)<76>_24.7:0.3598168238)<77>_45.2:0.9656260212)<78>_31.9:0.4993296351)<79>_52.2:0.9832235007)<80>_61.5:1.4934023608)<81>_28.1:0.4041672067)<82>_32.7:0.4572004896)<83>_46.0:0.6498982242)<84>_60.7:1.0729519431)<85>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<86>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,(((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<87>_73.2:1.3149706614,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<88>_60.3:0.7945469801)<89>_40.8:0.4975410906)<90>_25.9:0.5804530996,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<91>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<92>_73.6:1.1276281661)<93>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<94>_83.3:1.6930748463)<95>_69.4:1.0684586717)<96>_45.6:0.4036812336)<97>_73.6:1.5413434646)<98>_30.9:0.3693874568)<99>_15.4:0.27909409679999997)<100>_58.6:1.085258536)<101>_61.7:1.0889873501)<102>_53.9:0.8472482432)<103>_31.6:0.3505836959,(Apodemus_sylvaticus_SMG3823:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<104>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<105>_68.9:0.9263978723)<106>_62.4:0.8789694589)<107>_37.8:0.2769121752)<108>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<109>_75.9:1.1887971512)<110>_68.8:1.0439667256)<111>_86.0:2.4876875761,(Mus_pahari_10460X1,((Mus_minutoides_10460X2,Mus_musculoides_LSUMZ37820)<112>_92.7:2.5425212627,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<113>_61.7:0.7132476868)<114>_58.4:0.6630723193,((Mus_spretus_10460X4,(Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<115>_62.5:0.9203018035)<116>_37.6:0.225357246,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<117>_49.7:0.5423114712)<118>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<119>:0.7981842885)<120>_60.9:0.9608772308)<121>_60.4:1.665000483)<122>_77.3:1.7311567402)<123>_78.8:0.2477784982)<124>_36.1:0.2527088412)<125>_37.7:2.2937394322)<126>_84.3:0.4510519503)<127>_40.4:0.6485692565)<128>_40.4:0.1586408708)<129>_20.9:0.4625474844)<130>_38.2:1.4012078772)<131>_73.6:0.836628)<132>;
## 4 0.24650996098000003 3 5 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,(Echiothrix_centrosa_Z27993:0.2026624819,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<11>_58.6:0.9550136585)<12>_25.6:0.2611340631)<13>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<14>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<15>_91.0:2.3598216167)<16>_77.0:1.3573337145)<17>_43.1:0.3412238823)<18>_49.1:0.5965268673)<19>_50.8:0.5822530386)<20>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<21>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<22>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<23>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<24>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,Rattus_praetor_sample1:0.2976872564)<25>_42.1:0.5016899299)<26>_42.2:0.6163687721)<27>_21.7:0.35596868260000003)<28>_29.8:0.3841747735)<29>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<30>_57.3:0.8514222833,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<31>_30.3:0.3643412873)<32>_31.1:0.7942047297)<33>_26.3:0.3148108749)<34>_55.5:0.9917213602)<35>_69.4:1.6745340036)<36>_32.5:0.2418310363)<37>_71.0:1.6163767038)<38>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<39>_90.1:2.4875535923)<40>_63.6:0.8953226351)<41>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<42>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<43>_47.7:0.3648280463)<44>_70.7:1.0891800778)<45>_70.2:1.3009107858,(Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<46>_58.8:0.7579029078)<47>_37.4:0.6467754018)<48>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<49>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<50>_82.4:1.8201101793)<51>_34.0:0.289058951,((Leporillus_conditor_ABTC13335,Leporillus_apicalis_C90)<52>_34.3:0.2470298415,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<53>_39.8:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<54>_68.1:1.0376499343)<55>_44.2:0.5344044707)<56>_52.2:0.8454501739)<57>_30.9:0.3462089248,((Zyzomys_woodwardi_WAMM21724:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<58>_51.3:0.5034030811)<59>_47.1:0.5542933514)<60>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<61>_45.3:0.5563888158)<62>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<63>_74.9:1.4010924273)<64>_32.0:0.3655304624,((Pseudomys_oralis_RAT7,(Pseudomys_desertor_ABTC41464,Pseudomys_shortridgei_Z25113)<65>_72.7:1.2878584658)<66>_26.8:0.3018478021,(Pseudomys_australis_M25541,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<67>_38.3:0.3741615204)<68>_50.6:1.1934282181)<69>_19.7:0.2788384631)<70>_8.64:0.2510663596)<71>_17.5:0.2931795082)<72>_24.7:0.3598168238)<73>_45.2:0.9656260212)<74>_31.9:0.4993296351)<75>_52.2:0.9832235007)<76>_61.5:1.4934023608)<77>_28.1:0.4041672067)<78>_32.7:0.4572004896)<79>_46.0:0.6498982242)<80>_60.7:1.0729519431)<81>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<82>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,(((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<83>_73.2:1.3149706614,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<84>_60.3:0.7945469801)<85>_40.8:0.4975410906)<86>_25.9:0.5804530996,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<87>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<88>_73.6:1.1276281661)<89>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<90>_83.3:1.6930748463)<91>_69.4:1.0684586717)<92>_45.6:0.4036812336)<93>_73.6:1.5413434646)<94>_30.9:0.3693874568)<95>_15.4:0.27909409679999997)<96>_58.6:1.085258536)<97>_61.7:1.0889873501)<98>_53.9:0.8472482432)<99>_31.6:0.3505836959,(Apodemus_sylvaticus_SMG3823:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<100>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<101>_68.9:0.9263978723)<102>_62.4:0.8789694589)<103>_37.8:0.2769121752)<104>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<105>_75.9:1.1887971512)<106>_68.8:1.0439667256)<107>_86.0:2.4876875761,(Mus_pahari_10460X1,((Mus_minutoides_10460X2,Mus_musculoides_LSUMZ37820)<108>_92.7:2.5425212627,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<109>_61.7:0.7132476868)<110>_58.4:0.6630723193,((Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<111>_62.5:1.1456590495,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<112>_49.7:0.5423114712)<113>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<114>:0.7981842885)<115>_60.9:0.9608772308)<116>_60.4:1.665000483)<117>_77.3:1.7311567402)<118>_78.8:0.2477784982)<119>_36.1:0.2527088412)<120>_37.7:2.2937394322)<121>_84.3:0.4510519503)<122>_40.4:0.6485692565)<123>_40.4:0.1586408708)<124>_20.9:0.4625474844)<125>_38.2:1.4012078772)<126>_73.6:0.836628)<127>;
## 5 0.25607892996 3 6 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,(Echiothrix_centrosa_Z27993:0.2026624819,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<11>_58.6:0.9550136585)<12>_25.6:0.2611340631)<13>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<14>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<15>_91.0:2.3598216167)<16>_77.0:1.3573337145)<17>_43.1:0.3412238823)<18>_49.1:0.5965268673)<19>_50.8:0.5822530386)<20>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<21>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<22>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<23>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<24>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,Rattus_praetor_sample1:0.2976872564)<25>_42.1:0.5016899299)<26>_42.2:0.6163687721)<27>_21.7:0.35596868260000003)<28>_29.8:0.3841747735)<29>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<30>_57.3:0.8514222833,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<31>_30.3:0.3643412873)<32>_31.1:0.7942047297)<33>_26.3:0.3148108749)<34>_55.5:0.9917213602)<35>_69.4:1.6745340036)<36>_32.5:0.2418310363)<37>_71.0:1.6163767038)<38>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<39>_90.1:2.4875535923)<40>_63.6:0.8953226351)<41>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<42>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<43>_47.7:0.3648280463)<44>_70.7:1.0891800778)<45>_70.2:1.3009107858,(Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<46>_58.8:0.7579029078)<47>_37.4:0.6467754018)<48>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<49>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<50>_82.4:1.8201101793)<51>_34.0:0.289058951,(Leporillus_apicalis_C90:0.2470298415,((Conilurus_albipes_NMV-c7585,Conilurus_penicillatus_M14056)<52>_39.8:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<53>_68.1:1.0376499343)<54>_44.2:0.5344044707)<55>_52.2:0.8454501739)<56>_30.9:0.3462089248,((Zyzomys_woodwardi_WAMM21724:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<57>_51.3:0.5034030811)<58>_47.1:0.5542933514)<59>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<60>_45.3:0.5563888158)<61>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<62>_74.9:1.4010924273)<63>_32.0:0.3655304624,(Pseudomys_australis_M25541,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<64>_38.3:0.3741615204)<65>_50.6:1.1934282181)<66>_19.7:0.5299048227)<67>_17.5:0.2931795082)<68>_24.7:0.3598168238)<69>_45.2:0.9656260212)<70>_31.9:0.4993296351)<71>_52.2:0.9832235007)<72>_61.5:1.4934023608)<73>_28.1:0.4041672067)<74>_32.7:0.4572004896)<75>_46.0:0.6498982242)<76>_60.7:1.0729519431)<77>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<78>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,(((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<79>_73.2:1.3149706614,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<80>_60.3:0.7945469801)<81>_40.8:0.4975410906)<82>_25.9:0.5804530996,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<83>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<84>_73.6:1.1276281661)<85>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<86>_83.3:1.6930748463)<87>_69.4:1.0684586717)<88>_45.6:0.4036812336)<89>_73.6:1.5413434646)<90>_30.9:0.3693874568)<91>_15.4:0.27909409679999997)<92>_58.6:1.085258536)<93>_61.7:1.0889873501)<94>_53.9:0.8472482432)<95>_31.6:0.3505836959,(Apodemus_sylvaticus_SMG3823:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<96>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<97>_68.9:0.9263978723)<98>_62.4:0.8789694589)<99>_37.8:0.2769121752)<100>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<101>_75.9:1.1887971512)<102>_68.8:1.0439667256)<103>_86.0:2.4876875761,(Mus_pahari_10460X1,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<104>_61.7:0.7132476868)<105>_58.4:0.6630723193,((Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<106>_62.5:1.1456590495,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<107>_49.7:0.5423114712)<108>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<109>:0.7981842885)<110>_60.9:0.9608772308)<111>_60.4:1.665000483)<112>_77.3:1.7311567402)<113>_78.8:0.5004873394)<114>_37.7:2.2937394322)<115>_84.3:0.4510519503)<116>_40.4:0.6485692565)<117>_40.4:0.1586408708)<118>_20.9:0.4625474844)<119>_38.2:1.4012078772)<120>_73.6:0.836628)<121>;
## 6 0.27629215901 2 2 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<11>_58.6:1.2161477216)<12>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<13>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<14>_91.0:2.3598216167)<15>_77.0:1.3573337145)<16>_43.1:0.3412238823)<17>_49.1:0.5965268673)<18>_50.8:0.5822530386)<19>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<20>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<21>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<22>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<23>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,Rattus_praetor_sample1:0.2976872564)<24>_42.1:0.5016899299)<25>_42.2:0.6163687721)<26>_21.7:0.35596868260000003)<27>_29.8:0.3841747735)<28>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<29>_57.3:0.8514222833,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<30>_30.3:0.3643412873)<31>_31.1:0.7942047297)<32>_26.3:0.3148108749)<33>_55.5:0.9917213602)<34>_69.4:1.6745340036)<35>_32.5:0.2418310363)<36>_71.0:1.6163767038)<37>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<38>_90.1:2.4875535923)<39>_63.6:0.8953226351)<40>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<41>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<42>_47.7:0.3648280463)<43>_70.7:1.0891800778)<44>_70.2:1.3009107858,(Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<45>_58.8:0.7579029078)<46>_37.4:0.6467754018)<47>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<48>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<49>_82.4:1.8201101793)<50>_34.0:0.289058951,(Leporillus_apicalis_C90:0.2470298415,(Conilurus_penicillatus_M14056:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<51>_68.1:1.0376499343)<52>_44.2:0.5344044707)<53>_52.2:0.8454501739)<54>_30.9:0.3462089248,((Zyzomys_woodwardi_WAMM21724:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<55>_51.3:0.5034030811)<56>_47.1:0.5542933514)<57>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<58>_45.3:0.5563888158)<59>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<60>_74.9:1.4010924273)<61>_32.0:0.3655304624,(Pseudomys_australis_M25541,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<62>_38.3:0.3741615204)<63>_50.6:1.1934282181)<64>_19.7:0.5299048227)<65>_17.5:0.2931795082)<66>_24.7:0.3598168238)<67>_45.2:0.9656260212)<68>_31.9:0.4993296351)<69>_52.2:0.9832235007)<70>_61.5:1.4934023608)<71>_28.1:0.4041672067)<72>_32.7:0.4572004896)<73>_46.0:0.6498982242)<74>_60.7:1.0729519431)<75>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<76>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,(((Aethomys_hindei_MVZ196257,Aethomys_nyikae_FMNH196708)<77>_73.2:1.3149706614,(Grammomys_dryas_LSUMZ37716,(Thamnomys_venustus_LSUMZ37935,Thamnomys_kempi_TCD4437)<78>_60.3:0.7945469801)<79>_40.8:0.4975410906)<80>_25.9:0.5804530996,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<81>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<82>_73.6:1.1276281661)<83>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<84>_83.3:1.6930748463)<85>_69.4:1.0684586717)<86>_45.6:0.4036812336)<87>_73.6:1.5413434646)<88>_30.9:0.3693874568)<89>_15.4:0.27909409679999997)<90>_58.6:1.085258536)<91>_61.7:1.0889873501)<92>_53.9:0.8472482432)<93>_31.6:0.3505836959,(Apodemus_sylvaticus_SMG3823:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<94>_80.3:1.5354809131,(Mastomys_natalensis_T4162,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<95>_68.9:0.9263978723)<96>_62.4:0.8789694589)<97>_37.8:0.2769121752)<98>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<99>_75.9:1.1887971512)<100>_68.8:1.0439667256)<101>_86.0:2.4876875761,(Mus_pahari_10460X1,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<102>_61.7:0.7132476868)<103>_58.4:0.6630723193,((Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<104>_62.5:1.1456590495,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<105>_49.7:0.5423114712)<106>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<107>:0.7981842885)<108>_60.9:0.9608772308)<109>_60.4:1.665000483)<110>_77.3:1.7311567402)<111>_78.8:0.5004873394)<112>_37.7:2.2937394322)<113>_84.3:0.4510519503)<114>_40.4:0.6485692565)<115>_40.4:0.1586408708)<116>_20.9:0.4625474844)<117>_38.2:1.4012078772)<118>_73.6:0.836628)<119>;
## 7 0.28606949474 2 6 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<11>_58.6:1.2161477216)<12>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<13>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<14>_91.0:2.3598216167)<15>_77.0:1.3573337145)<16>_43.1:0.3412238823)<17>_49.1:0.5965268673)<18>_50.8:0.5822530386)<19>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<20>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<21>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<22>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<23>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,Rattus_praetor_sample1:0.2976872564)<24>_42.1:0.5016899299)<25>_42.2:0.6163687721)<26>_21.7:0.35596868260000003)<27>_29.8:0.3841747735)<28>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<29>_57.3:0.8514222833,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<30>_30.3:0.3643412873)<31>_31.1:0.7942047297)<32>_26.3:0.3148108749)<33>_55.5:0.9917213602)<34>_69.4:1.6745340036)<35>_32.5:0.2418310363)<36>_71.0:1.6163767038)<37>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<38>_90.1:2.4875535923)<39>_63.6:0.8953226351)<40>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<41>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<42>_47.7:0.3648280463)<43>_70.7:1.0891800778)<44>_70.2:1.3009107858,(Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<45>_58.8:0.7579029078)<46>_37.4:0.6467754018)<47>_70.6:1.5826288229,((((Solomys_salebrosus_ABTC64864,Melomys_rufescens_ABTC44798)<48>_70.1:1.1297727697,(Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<49>_82.4:1.8201101793)<50>_34.0:0.289058951,(Leporillus_apicalis_C90:0.2470298415,(Conilurus_penicillatus_M14056:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<51>_68.1:1.0376499343)<52>_44.2:0.5344044707)<53>_52.2:0.8454501739)<54>_30.9:0.3462089248,((Zyzomys_woodwardi_WAMM21724:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<55>_51.3:0.5034030811)<56>_47.1:0.5542933514)<57>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<58>_45.3:0.5563888158)<59>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,((Pseudomys_fumeus_ABTC08168,(Pseudomys_albocinereus_WAMM18855,Pseudomys_apodemoides_M16672)<60>_74.9:1.4010924273)<61>_32.0:0.3655304624,(Pseudomys_australis_M25541,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<62>_38.3:0.3741615204)<63>_50.6:1.1934282181)<64>_19.7:0.5299048227)<65>_17.5:0.2931795082)<66>_24.7:0.3598168238)<67>_45.2:0.9656260212)<68>_31.9:0.4993296351)<69>_52.2:0.9832235007)<70>_61.5:1.4934023608)<71>_28.1:0.4041672067)<72>_32.7:0.4572004896)<73>_46.0:0.6498982242)<74>_60.7:1.0729519431)<75>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<76>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<77>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<78>_73.6:1.1276281661)<79>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<80>_83.3:1.6930748463)<81>_69.4:1.0684586717)<82>_45.6:0.4036812336)<83>_73.6:1.5413434646)<84>_30.9:0.6484815535999999)<85>_58.6:1.085258536)<86>_61.7:1.0889873501)<87>_53.9:0.8472482432)<88>_31.6:0.3505836959,(Apodemus_sylvaticus_SMG3823:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<89>_80.3:1.5354809131,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<90>_68.9:0.9263978723)<91>_62.4:1.1558816341)<92>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<93>_75.9:1.1887971512)<94>_68.8:1.0439667256)<95>_86.0:2.4876875761,(Mus_pahari_10460X1,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<96>_61.7:0.7132476868)<97>_58.4:0.6630723193,((Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<98>_62.5:1.1456590495,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<99>_49.7:0.5423114712)<100>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<101>:0.7981842885)<102>_60.9:0.9608772308)<103>_60.4:1.665000483)<104>_77.3:1.7311567402)<105>_78.8:0.5004873394)<106>_37.7:2.2937394322)<107>_84.3:0.4510519503)<108>_40.4:0.6485692565)<109>_40.4:0.1586408708)<110>_20.9:0.4625474844)<111>_38.2:1.4012078772)<112>_73.6:0.836628)<113>;
## 8 0.29363028302 2 5 ((Lophiomys_imhausi_UM5152,Lophuromys_woosnami_LSUMZ37793)<1>_84.3:0.836628,(((Phloeomys_cumingi_FMNH198472,Phloeomys_pallidus_JEC43)<2>_93.9:2.674754292,((Crateromys_heaneyi_KU165014,Batomys_russatus_KU165776)<3>_82.1:1.4948862343,(Carpomys_melanurus_FMNH198723,Musseromys_anacuao_FMNH209523)<4>_90.1:2.1685601996)<5>_72.6:1.063645983)<6>_83.5:1.8635414725,(((Maxomys_surifer_JAE3632,(Maxomys_musschenbroekii_sample1,(Crunomys_melanius_KU168558,Crunomys_celebensis_Z21894)<7>_88.1:1.9901101984)<8>_65.2:0.8261808296)<9>_79.2:1.5755553345,(((Gracilimus_radix_Z08508,Waiomys_mamasae_Z20624)<10>_87.4:2.2837479704,(Tateomys_rhinogradoides_Z21785,Tateomys_macrocercus_Z21834:0.0741214951)<11>_58.6:1.2161477216)<12>_55.2:0.963582598,((Saxatilomys_paulinae_ABTC116266,((Margaretamys_parvus_NMVZ21833,Margaretamys_christinae_TMar1)<13>_80.2:1.5882238942,(Leopoldomys_sabanus_Z25191,(Anonymomys_mindorensis_FMNH2222010,(Niviventer_lepturus_JAE4746,(Niviventer_rapit_LSUMZ38196,Niviventer_bukit_LSUMZ38136)<14>_91.0:2.3598216167)<15>_77.0:1.3573337145)<16>_43.1:0.3412238823)<17>_49.1:0.5965268673)<18>_50.8:0.5822530386)<19>_70.5:1.3780790456,((Berylmys_bowersi_ABTC116431,Berylmys_mackenziei_ABTC116402)<20>_88.4:2.1652461429,(((Nesokia_indica_ABTC117074,Bandicota_indica_ABTC119185)<21>_75.9:1.4602776295,((Rattus_exulans_sample1,rnor6:0.0624462765)<22>_32.6:0.4661106307,((Tarsomys_apoensis_KU167148,Limnomys_sibuanus_FMNH147948)<23>_56.9:0.8290994192,(Rattus_xanthurus_LSUMZ39196,(Rattus_morotaiensis_ASAM29,Rattus_praetor_sample1:0.2976872564)<24>_42.1:0.5016899299)<25>_42.2:0.6163687721)<26>_21.7:0.35596868260000003)<27>_29.8:0.3841747735)<28>_39.9:0.6456882855,((Sundamys_annandalei_YS118,Sundamys_muelleri_JAE1283)<29>_57.3:0.8514222833,(Bunomys_andrewsi_sample1,(Bunomys_torajae_NMVZ21736,Bunomys_chrysocomus_JAE4867)<30>_30.3:0.3643412873)<31>_31.1:0.7942047297)<32>_26.3:0.3148108749)<33>_55.5:0.9917213602)<34>_69.4:1.6745340036)<35>_32.5:0.2418310363)<36>_71.0:1.6163767038)<37>_78.5:2.1789535893,((Chiropodomys_gliroides_Z25153,(Haeromys_minahassae_JAE4996,((Apomys_lubangensis_JAE169,(Archboldomys_luzonensis_EAR1826,(Chrotomys_whiteheadi_KU168311,Chrotomys_mindorensis_JAE520)<38>_90.1:2.4875535923)<39>_63.6:0.8953226351)<40>_75.4:1.5363045693,((Chiruromys_vates_ABTC43096,Pogonomys_macrourus_ABTC43144:0.1516553011)<41>_22.1:0.5730324186,(Coccymys_ruemmleri_ABTC49489,(((Crossomys_moncktoni_ABTC46614,(Parahydromys_asper_ABTC45798,(Hydromys_sp-nov_YS391,Hydromys_chrysogaster_Z5248)<42>_47.7:0.3648280463)<43>_70.7:1.0891800778)<44>_70.2:1.3009107858,(Xeromys_myoides_ABTC30709,(Microhydromys_richardsoni_ANWCM35851,Pseudohydromys_pumehanae_ABTC43920)<45>_58.8:0.7579029078)<46>_37.4:0.6467754018)<47>_70.6:1.5826288229,(((Uromys_sp-nov_YS380,Uromys_caudimaculatus_DT10Uc01)<48>_82.4:2.1091691303,(Leporillus_apicalis_C90:0.2470298415,(Conilurus_penicillatus_M14056:0.2707120133,(Mesembriomys_macrurus_ABTC7337,Mesembriomys_gouldii_ABTC7449)<49>_68.1:1.0376499343)<50>_44.2:0.5344044707)<51>_52.2:0.8454501739)<52>_30.9:0.3462089248,((Zyzomys_woodwardi_WAMM21724:0.2141921628,(Zyzomys_maini_ABTC07900,(Zyzomys_palatalis_ABTC30744,Zyzomys_argurus_ABTC61630)<53>_51.3:0.5034030811)<54>_47.1:0.5542933514)<55>_64.6:1.2613638418,((Pseudomys_calabyi_U4324,(Pseudomys_johnsoni_ABTC08053,Pseudomys_patrius_JM10865)<56>_45.3:0.5563888158)<57>_65.6:1.4756196835000002,(Pseudomys_occidentalis_ABTC08043,(Pseudomys_australis_M25541,(Pseudomys_hermannsburgensis_ABTC08067,(Pseudomys_delicatulus_U1509,Pseudomys_novaehollandiae_ABTC08140:0.0786021292)<58>_38.3:0.3741615204)<59>_50.6:1.1934282181)<60>_19.7:0.8230843309)<61>_24.7:0.3598168238)<62>_45.2:0.9656260212)<63>_31.9:0.4993296351)<64>_52.2:0.9832235007)<65>_61.5:1.4934023608)<66>_28.1:0.4041672067)<67>_32.7:0.4572004896)<68>_46.0:0.6498982242)<69>_60.7:1.0729519431)<70>_63.7:1.3677520373,((Vandeleuria_oleracea_ABTC116404,(Pithecheir_melanurus_LSUMZ38198,((Otomys_tropicalis_LSUMZ37841,Otomys_denti_LSUMZ37840)<71>_92.0:2.5551991617,(Oenomys_hypoxanthus_LSUMZ37838,((Dasymys_montanus_FMNH144389,Dasymys_incomtus_LSUMZ37702)<72>_93.8:2.9178343713,(Rhabdomys_pumilio_MNHN1995065,((Mylomys_dybowskii_MNHN1997072,(Pelomys_isseli_FMNH137886,Pelomys_minor_FMNH219213)<73>_73.6:1.1276281661)<74>_65.4:0.98598496,(Lemniscomys_striatus_TCD4711,(Arvicanthus_niloticus_MNHN1999201,Arvicanthus_neumanni_FMNH158037)<75>_83.3:1.6930748463)<76>_69.4:1.0684586717)<77>_45.6:0.4036812336)<78>_73.6:1.5413434646)<79>_30.9:0.6484815535999999)<80>_58.6:1.085258536)<81>_61.7:1.0889873501)<82>_53.9:0.8472482432)<83>_31.6:0.3505836959,(Apodemus_sylvaticus_SMG3823:0.2196446811,((((Praomys_jacksoni_REC31,Praomys_degraaffi_TCD4312)<84>_80.3:1.5354809131,(Myomyscus_verreauxii_MNHN1999102,(Zelotomys_woosnami_TTU-M115260,Colomys_goslingi_TCD4175)<85>_68.9:0.9263978723)<86>_62.4:1.1558816341)<87>_53.3:0.669461102,(Heimyscus_fumosus_FMNH167810,(Hylomyscus_stella_LSUMZ37742,Hylomyscus_vulcanorum_TCD4382)<88>_75.9:1.1887971512)<89>_68.8:1.0439667256)<90>_86.0:2.4876875761,(Mus_pahari_10460X1,(Mus_platythrix_10460X13,((Mus_caroli_10460X9,(Mus_cookii_10460X3,Mus_cervicolor_10460X10)<91>_61.7:0.7132476868)<92>_58.4:0.6630723193,((Mus_spicilegus_10460X11,Mus_macedonicus_10460X12)<93>_62.5:1.1456590495,((Mus_musculus-castaneus_10460X7,(Mus_musculus-musculus_10460X14,Mus_musculus-reference_10460X5)<94>_49.7:0.5423114712)<95>_49.2:0.5300831933,(Mus_musculus-domesticus_10460X15,mm10:0.0)<96>:0.7981842885)<97>_60.9:0.9608772308)<98>_60.4:1.665000483)<99>_77.3:1.7311567402)<100>_78.8:0.5004873394)<101>_37.7:2.2937394322)<102>_84.3:0.4510519503)<103>_40.4:0.6485692565)<104>_40.4:0.1586408708)<105>_20.9:0.4625474844)<106>_38.2:1.4012078772)<107>_73.6:0.836628)<108>;
## # 11.18.2021 08:34:57 Writing summary stats to log Success 12.93967 0.02286 25.55469 5485.52344
## # ===============================================================================================================================================================================
## #
## # Done!
## #
## # Pared 47 total branches and removed 79 total tips.
## #
## # The date and time at the end is: 11.18.2021 | 08:34:57
## # Total execution time: 12.942 seconds.
## # Output directory for this run: min-spec-paring-astral-exempt-2
## # Log file for this run: min-spec-paring-astral-exempt-2/min-spec-paring-astral-exempt-2.log
## # ===============================================================================================================================================================================
## #
# Read the whole logfile as raw text and print
